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Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

Citation
Brewer et al. (2016). Nature Microbiology 2 (2)
Names
Ca. Udaeobacter copiosus
Abstract
AbstractAlthough bacteria within the Verrucomicrobia phylum are pervasive in soils around the world, they are under-represented in both isolate collections and genomic databases. Here, we describe a single verrucomicrobial group within the class Spartobacteria that is not closely related to any previously described taxa. We examined more than 1,000 soils and found this spartobacterial phylotype to be ubiquitous and consistently one of the most abundant soil bacterial phylotypes, particularly in
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Draft Genome Sequence of the Bactrocera oleae Symbiont “ Candidatus Erwinia dacicola”

Citation
Blow et al. (2016). Genome Announcements 4 (5)
Names
Ca. Erwinia dacicola
Abstract
ABSTRACT “ Candidatus Erwinia dacicola” is a Gammaproteobacterium that forms a symbiotic association with the agricultural pest Bactrocera oleae . Here, we present a 2.1-Mb draft hybrid genome assembly for “ Ca. Erwinia dacicola” generated from single-cell and metagenomic data.

Complete Genome Sequence of “ Candidatus Viadribacter manganicus” Isolated from a German Floodplain Area

Citation
Braun, Szewzyk (2016). Genome Announcements 4 (5)
Names
Ca. Viadribacter manganicus
Abstract
ABSTRACT Iron- and manganese-depositing bacteria occur in many soils and all water systems, and their biogenic depositions of ochre in technical systems may cause severe clogging problems and monetary losses. “ Candidatus Viadribacter manganicus” is a small coccoid, iron- and manganese-depositing bacterium isolated from the Lower Oder Valley National Park, Germany.

Nitrogen fixation in a chemoautotrophic lucinid symbiosis

Citation
König et al. (2016). Nature Microbiology 2 (1)
Names
Ca. Thiodiazotropha fergusoni “Thiodiazotropha endolucinida”
Abstract
AbstractThe shallow water bivalve Codakia orbicularis lives in symbiotic association with a sulfur-oxidizing bacterium in its gills. The endosymbiont fixes CO2 and thus generates organic carbon compounds, which support the host's growth. To investigate the uncultured symbiont's metabolism and symbiont–host interactions in detail we conducted a proteogenomic analysis of purified bacteria. Unexpectedly, our results reveal a hitherto completely unrecognized feature of the C. orbicularis symbiont's
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