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Novel taxonomic and functional diversity of bacteria from the upper digestive tract of chicken

Citation
Rios-Galicia et al. (2023).
Names
Limosilactobacillus galli Limosilactobacillus avium Limosilactobacillus pulli “Clostridium anaeroviscerum” Limosilactobacillus viscerum Limosilactobacillus difficilis Ligilactobacillus hohenheimensis Clostridium butanoliproducens
Abstract
AbstractStrategies to increase the production rate of chicken for human consumption alter the natural process of microbial colonisation and the nutritional performance of the animal. The lack of sufficient reference genomes limits the interpretation of sequencing data and restrain the study of complex functions. In this study, 43 strains obtained from crop, jejunum and ileum of chicken were isolated, characterised and genome analysed to observe their metabolic profiles, adaptive strategies and t

Candidatus List. Lists of names of prokaryotic Candidatus phyla

Citation
Oren, Göker (2023). International Journal of Systematic and Evolutionary Microbiology 73 (5)
Names
“Caldatribacteriota” “Caldipriscota” “Calescibacteriota” “Canglongiota” “Deferrimicrobiota” “Dormiibacterota” “Eremiobacterota” “Fermentibacterota” “Fervidibacterota” “Freyrarchaeota” “Geothermarchaeota” “Heilongiota” “Hermodarchaeota” “Hinthialibacterota” “Huberarchaeota” “Hydrogenedentota” “Hydrothermota” “Iainarchaeota” “Kapaibacteriota” “Krumholzibacteriota” “Kryptoniota” “Kerfeldiibacteriota” “Komeiliibacteriota” “Levyibacteriota” “Lindowiibacteriota” “Liptoniibacteriota” “Lloydiibacteriota” “Magasanikiibacteriota” “Margulisiibacteriota” “Martarchaeota” “Melainobacteriota” “Moissliibacteriota” “Montesoliibacteriota” “Nealsoniibacteriota” “Nezhaarchaeota” “Niyogiibacteriota” “Nomuraibacteriota” “Pacearchaeota” “Peregrinibacteriota” “Poribacteriota” “Portnoyibacteriota” “Ratteibacteriota” “Raymondiibacteriota” “Roizmaniibacteriota” “Rokuibacteriota” “Ryaniibacteriota” “Saganiibacteriota” “Schekmaniibacteriota” “Spechtiibacteriota” “Stahliibacteriota” “Staskawicziibacteriota” “Sungiibacteriota” “Tagaibacteriota” “Tayloriibacteriota” “Tectimicrobiota” “Terryibacteriota” “Torokiibacteriota” “Uhriibacteriota” “Vebleniibacteriota” “Wolfeibacteriota” “Woykeibacteriota” “Yanofskyibacteriota” “Yonathiibacteriota” “Zambryskiibacteriota” “Abawacaibacteriota” “Augarchaeota” “Lokiarchaeota” “Macinerneyibacteriota” “Methanomethylicota” “Moduliflexota” “Nanohalarchaeota” “Neomarinimicrobiota” “Odinarchaeota” “Paceibacterota” “Parcunitrobacterota” “Parvarchaeota” “Poseidoniota” “Qinglongiota” “Saccharimonadota” “Sifarchaeota” “Sumerlaeota” “Tianyaibacteriota” “Undinarchaeota” “Wukongarchaeota” “Babelota” “Wirthibacterota” “Rifleibacteriota” “Joergenseniibacteriota” “Kueneniibacteriota” “Jacksoniibacteriota” “Moraniibacteriota” “Shapirobacteriota” “Zixiibacteriota” Cloacimonadota Muiribacteriota “Latescibacterota” “Acetithermota” “Aenigmatarchaeota” “Aerophobota” “Altiarchaeota” “Altimarinota” “Aminicenantota”
Abstract

Endophyte mediated restoration of citrus microbiome and modulation of host defense genes against Candidatus Liberibacter asiaticus

Citation
Li et al. (2023).
Names
Ca. Liberibacter asiaticus
Abstract
Abstract Background Phloem limited non-culturable bacteria Candidatus Liberibacter asiaticus (CLas) affects the worldwide citrus production through causing citrus Huanglongbing (HLB). Despite the efficient colonization of citrus endophyte in the phloem as same niche as CLas pathogen, citrus microbiome manipulation and recruitment as well as citrus defense mechanisms in the presence of indigenous citrus endophyte against this pathogen are still unknown.Results Endophyte-mediated microbiom

Water column dynamics control nitrite-dependent anaerobic methane oxidation by Candidatus “Methylomirabilis” in stratified lake basins

Citation
Su et al. (2023). The ISME Journal 17 (5)
Names
Methylomirabilis
Abstract
AbstractWe investigated microbial methane oxidation in the water column of two connected but hydrodynamically contrasting basins of Lake Lugano, Switzerland. Both basins accumulate large amounts of methane in the water column below their chemoclines, but methane oxidation efficiently prevents methane from reaching surface waters. Here we show that in the meromictic North Basin water column, a substantial fraction of methane was eliminated through anaerobic methane oxidation (AOM) coupled to nitr

Assessing Carrot Accessions Susceptibility to the Bacterial Pathogen ‘Candidatus Liberibacter solanacearum’ and Its Associated Symptoms

Citation
Hamershlak et al. (2023). Phytopathology® 113 (5)
Names
“Liberibacter solanacearum”
Abstract
‘ Candidatus Liberibacter solanacearum’ is an insect-transmitted bacterium associated with several plant diseases. In the Mediterranean Basin, ‘ Ca. L. solanacearum’ haplotype D is vectored by Bactericera trigonica and can severely infect carrot plants leading to abnormal growth phenotypes and significant yield losses. Insecticide applications are insufficient to suppress disease spread and damage, and additional means for disease control are needed. In the current study, we evaluated the resis